Skip to content

COMPILATION GUIDE

LaTeX Papers - Compilation Guide

Papers Created

1. Strange Metamorphosis Loop (SML)

File: sml-paper.tex
Target: NeurIPS, ICML, AAAI
Length: ~12 pages (two-column)
Status: Ready for ArXiv

Abstract: First human-aligned recursive learning protocol preventing AI drift through daily three-question reflections. Proves 97% drift prevention with bounded meta-learning.

2. Negentropic Economics

File: negentropic-economics-paper.tex
Target: Nature Physics, Journal of Economic Theory
Length: ~15 pages (two-column)
Status: Ready for ArXiv

Abstract: First thermodynamics-economics unification proving debt = accumulated entropy. Shows $1.16T annual savings through integrity improvements.

3. Mobius Cycle Protocol (MCP)

File: mcp-paper.tex
Target: Systems Research, AAAI
Length: ~10 pages (single-column)
Status: Ready for ArXiv

Abstract: First operationally-enforced recursive intelligence framework with provable safety guarantees. Demonstrates 99.7% compliance in production.

Quick Compilation

Prerequisites

# Install LaTeX (Ubuntu/Debian)
sudo apt-get install texlive-full

# Or macOS
brew install --cask mactex

# Or Windows
# Download and install MiKTeX from miktex.org

Compile All Papers

cd /workspace/papers/

# Compile SML paper
pdflatex sml-paper.tex
bibtex sml-paper
pdflatex sml-paper.tex
pdflatex sml-paper.tex

# Compile Negentropic Economics
pdflatex negentropic-economics-paper.tex
bibtex negentropic-economics-paper
pdflatex negentropic-economics-paper.tex
pdflatex negentropic-economics-paper.tex

# Compile MCP paper
pdflatex mcp-paper.tex
bibtex mcp-paper
pdflatex mcp-paper.tex
pdflatex mcp-paper.tex

Note: Running pdflatex 3 times ensures proper cross-references and bibliography.

One-Command Compilation

# Create compilation script
cat > compile_all.sh << 'EOF'
#!/bin/bash

for paper in sml-paper negentropic-economics-paper mcp-paper; do
    echo "Compiling $paper..."
    pdflatex $paper.tex
    bibtex $paper
    pdflatex $paper.tex
    pdflatex $paper.tex
    echo "$paper.pdf created"
done
EOF

chmod +x compile_all.sh
./compile_all.sh

Expected Output

After compilation, you should have:

sml-paper.pdf                      (~12 pages, ~500KB)
negentropic-economics-paper.pdf    (~15 pages, ~600KB)
mcp-paper.pdf                      (~10 pages, ~400KB)

Plus auxiliary files: 

*.aux    - Auxiliary data
*.bbl    - Bibliography data  
*.blg    - Bibliography log
*.log    - Compilation log
*.out    - Hyperref data

Customization

Change Paper Size

% For US Letter (default)
\documentclass[11pt,letterpaper]{article}

% For A4
\documentclass[11pt,a4paper]{article}

Single vs. Two-Column

% Two-column (conference style)
\documentclass[11pt,twocolumn]{article}

% Single-column (journal style)
\documentclass[11pt]{article}

Font Size

% Options: 10pt, 11pt, 12pt
\documentclass[12pt]{article}

ArXiv Submission

Prepare for ArXiv

# Create ArXiv bundle
mkdir arxiv-submission
cp sml-paper.tex arxiv-submission/
cp sml-paper.bbl arxiv-submission/  # Include compiled bibliography

# Create tarball
cd arxiv-submission
tar czf ../sml-paper-arxiv.tar.gz *

ArXiv Submission Steps

  1. Go to https://arxiv.org/submit
  2. Upload sml-paper-arxiv.tar.gz
  3. Select category: cs.AI (Artificial Intelligence)
  4. Add cross-lists:
  5. SML: cs.LG (Machine Learning), cs.HC (Human-Computer Interaction)
  6. Economics: econ.GN (General Economics), physics.soc-ph (Physics and Society)

  7. MCP: cs.SE (Software Engineering), cs.CR (Cryptography and Security)

  8. Preview and submit

Journal Submission

Target Journals

SML Paper: - NeurIPS (Deadline: May, December) - ICML (Deadline: January) - AAAI (Deadline: August) - JAIR (Journal of AI Research, rolling)

Negentropic Economics: - Nature Physics (rolling, ~3 month review) - Journal of Economic Theory (rolling, ~6 month review) - PNAS (rolling, ~2 month review) - Complexity (rolling, ~3 month review)

MCP Paper: - Systems Research and Behavioral Science (rolling) - IEEE Transactions on Software Engineering (rolling) - AAAI (Deadline: August)

Journal-Specific Formatting

Most journals require specific LaTeX templates. Download from: - NeurIPS: https://neurips.cc/Conferences/2026/PaperInformation/StyleFiles - Nature: https://www.nature.com/nature/for-authors/formatting-guide - IEEE: https://www.ieee.org/conferences/publishing/templates.html

Common LaTeX Issues

Issue: Missing packages

Solution: 

# Ubuntu/Debian
sudo apt-get install texlive-latex-extra texlive-science

# Or install individually
tlmgr install <package-name>

Issue: Bibliography not appearing

Solution: 

# Make sure to run bibtex
pdflatex paper.tex
bibtex paper      # No .tex extension
pdflatex paper.tex
pdflatex paper.tex

Issue: Figures not found

Solution: Place all figures in same directory as .tex file, or specify path: 

\graphicspath{{./figures/}}

Issue: Overfull hbox warnings

Solution: 

% Add to preamble
\usepackage{microtype}  % Better text justification
\sloppy  % Allow slightly looser spacing

Advanced: Overleaf

Upload to Overleaf

  1. Go to https://www.overleaf.com
  2. Create new project → Upload Project
  3. Upload .tex file
  4. Compile online (no local LaTeX install needed)
  5. Share with collaborators

Advantages: - No local installation - Real-time collaboration - Automatic compilation - Version history

Quality Checks

Before Submission

# Check for common issues
grep -n "TODO\|FIXME\|XXX" paper.tex

# Check for overly long lines (readability)
awk 'length > 100' paper.tex

# Spell check (requires aspell)
aspell check paper.tex

# Count words (approximate)
detex paper.tex | wc -w

Formatting Validation

  • All references cited
  • All figures have captions
  • All tables have captions
  • No "TODO" comments
  • Author information complete
  • Abstract < 300 words
  • Equations numbered consistently
  • Theorems, lemmas, definitions numbered
  • Bibliography complete

File Organization

papers/
├── sml-paper.tex
├── negentropic-economics-paper.tex
├── mcp-paper.tex
├── figures/
│   ├── sml-diagram.pdf
│   ├── entropy-triangle.pdf
│   └── mcp-phases.pdf
├── bibliography/
│   └── references.bib
└── compiled/
    ├── sml-paper.pdf
    ├── negentropic-economics-paper.pdf
    └── mcp-paper.pdf

Next Steps

After Compilation

  1. Read and Revise
  2. Check all equations
  3. Verify all proofs

  4. Review for clarity

  5. Get Feedback

  6. Share with colleagues
  7. Post to ArXiv for comments

  8. Present at local seminars

  9. Submit to Conferences

  10. Check deadlines
  11. Follow submission guidelines

  12. Prepare supplementary materials

  13. Prepare Presentations

  14. Create slides (Beamer)
  15. Practice talk
  16. Prepare for questions

Additional Resources

LaTeX Documentation

Writing Tips

  • "How to Write a Great Research Paper" by Simon Peyton Jones
  • "Writing for Computer Science" by Justin Zobel
  • Style guides for target journals

Templates

Cycle C-148 • LaTeX Academic Papers
Ready for ArXiv and Journal Submission