ACADEMIC INDEX

Mobius Systems — Academic Documentation Index¶

Version: 2.0.0
Last Updated: 2025-01-27
Total Documents: 298 markdown files
Index Status: Comprehensive Academic Taxonomy

Executive Summary¶

This index provides a comprehensive, academically rigorous catalog of all documentation within the Mobius Systems monorepo. Documents are categorized by:

• Academic Classification (Peer-reviewed, Research, Specification, Implementation)
• Domain Taxonomy (Governance, Architecture, Economics, Operations)
• Maturity Level (Draft, Active, Deprecated, Archive)
• Cross-Reference Network (Related documents, dependencies, citations)

Classification System¶

Document Types¶

1. PEER-REVIEWED — Documents that have undergone formal academic or technical review
2. RESEARCH — Theoretical frameworks, proofs, and foundational research
3. SPECIFICATION — Formal technical specifications and protocol definitions
4. IMPLEMENTATION — Deployment guides, runbooks, and operational documentation
5. REFERENCE — Indices, registries, and quick-reference materials
6. ARCHIVE — Historical documents preserved for reference

Maturity Levels¶

• DRAFT — Work in progress, subject to change
• ACTIVE — Current, maintained documentation
• STABLE — Mature, rarely changed
• DEPRECATED — Superseded but preserved
• ARCHIVE — Historical reference only

Domain Taxonomy¶

01. FOUNDATIONAL THEORY¶

Academic Classification: Research
Maturity: Active
Peer Review Status: In Progress

Core Theorems & Frameworks¶

Constitution & Sovereignty¶

Cross-References: - See: 02-governance/SENTINEL_CONSTITUTION.md (Ratified framework) - See: FOUNDATION/CHARTER.md (Foundation charter) - See: FOUNDATION/BYLAWS.md (Operating procedures)

02. ECONOMIC ARCHITECTURE¶

Academic Classification: Specification (Peer-Reviewed)
Maturity: Stable
Peer Review Status: Complete

Whitepapers¶

Tokenomics¶

Cross-References: - See: ledger/gi-formula.md (GI calculation) - See: 06-specifications/protocols/mic-protocol.md (Protocol spec) - See: apps/indexer-api/README.md (Implementation)

03. GOVERNANCE FRAMEWORK¶

Academic Classification: Specification
Maturity: Active
Peer Review Status: Ratified

Core Governance Documents¶

Cross-References: - See: FOUNDATION/CHARTER.md (Foundation charter) - See: FOUNDATION/POLICIES/ANTI_CAPTURE_POLICY.md (Anti-capture policy) - See: FOUNDATION/PROCESS/RFC_PROCESS.md (RFC process)

04. TECHNICAL ARCHITECTURE¶

Academic Classification: Specification
Maturity: Active
Peer Review Status: Technical Review Complete

System Architecture¶

Architecture Decision Records (ADRs)¶

Cross-References: - See: 06-specifications/ (Technical specs) - See: infra/dva/flows/ (DVA flow definitions) - See: apps/ (Application implementations)

05. IMPLEMENTATION GUIDES¶

Academic Classification: Implementation
Maturity: Active
Peer Review Status: Community Reviewed

Quickstart & Onboarding¶

Deployment Guides¶

Development Guides¶

Operations Guides¶

Cross-References: - See: 08-processes/runbooks/ (Operational runbooks) - See: infra/observability/ (Monitoring setup) - See: apps/ (Application-specific guides)

06. RESEARCH & ACADEMIA¶

Academic Classification: Research
Maturity: Active
Peer Review Status: Varies by Document

KTT (Kaizen Turing Test)¶

Foundations¶

Cross-References: - See: evaluations/ktt/ (KTT evaluation results) - See: peer-review-summary.md (Peer review assessment) - See: peer-review-response.md (Review response)

07. TECHNICAL SPECIFICATIONS¶

Academic Classification: Specification
Maturity: Active
Peer Review Status: Technical Review

API Specifications¶

Protocol Specifications¶

Core Specifications¶

Cross-References: - See: 06-specifications/apis/ (API specs) - See: 06-specifications/protocols/ (Protocol specs) - See: 06-specifications/manifests/ (Manifest specs)

08. OPERATIONAL PROCESSES¶

Academic Classification: Implementation
Maturity: Active
Peer Review Status: Community Reviewed

Runbooks¶

Operations¶

Rituals¶

Cross-References: - See: infra/observability/OPS_RUNBOOK.md (Operations runbook) - See: infra/observability/OPS_ALERT_PLAYBOOK.md (Alert procedures) - See: infra/observability/OPS_ONCALL_ROTATION.md (On-call rotation)

09. REPORTS & STATUS¶

Academic Classification: Report
Maturity: Active
Peer Review Status: Internal Review

Implementation Reports¶

Cycle Reports¶

Communications¶

Cross-References: - See: CHANGELOG.md (Change history) - See: archive/ (Historical reports)

10. AGENTS & SENTINELS¶

Academic Classification: Specification
Maturity: Active
Peer Review Status: Community Reviewed

Founding Agents¶

Sentinels¶

Companions¶

Cross-References: - See: sentinels/ (Sentinel implementations) - See: agents/ (Agent configurations) - See: LLM_Docking_Spec_v1.md (LLM boarding protocol)

11. SECURITY & ASSURANCE¶

Academic Classification: Specification
Maturity: Active
Peer Review Status: Security Review

Threat Models¶

Audits¶

Drift Control¶

Policy & Safety¶

Cross-References: - See: FOUNDATION/POLICIES/SECURITY.md (Security policy) - See: FOUNDATION/POLICIES/RESPONSIBLE_DISCLOSURE.md (Disclosure policy) - See: .github/SECURITY.md (GitHub security)

12. PHILOSOPHY & MANIFESTO¶

Academic Classification: Research
Maturity: Stable
Peer Review Status: Community Consensus

Core Philosophy¶

Genesis & Manifest¶

Cross-References: - See: FOUNDATION/CHARTER.md (Foundation charter) - See: ledger/inscriptions/RETURN_TO_BALANCE_C119.md (Ledger inscription)

13. SPECIALIZED SYSTEMS¶

Encyclopedia¶

DVA (Distributed Verification Architecture)¶

Consensus Chamber¶

14. ARCHIVE & LEGACY¶

Academic Classification: Archive
Maturity: Archive
Peer Review Status: Historical Reference

Legacy Documentation¶

All documents in archive/legacy/ are preserved for historical reference. Key categories:

• archive/legacy/architecture/ — Historical architecture docs
• archive/legacy/governance/ — Historical governance docs
• archive/legacy/cycles/ — Historical cycle reports
• archive/legacy/ktt/ — Historical KTT documentation
• archive/completed/ — Completed initiative summaries

Note: Archive documents are not actively maintained but preserved for reference.

Cross-Reference Network¶

Core Dependencies¶

FOUNDATION/CHARTER.md
  ├─> 02-governance/overview.md
  ├─> 05-research/constitution/AI_INTEGRITY_CONSTITUTION.md
  └─> FOUNDATION/BYLAWS.md

01-whitepapers/MIC_Whitepaper_v2.1.md
  ├─> tokenomics/MIC_reward_formula.md
  ├─> ledger/gi-formula.md
  └─> 06-specifications/protocols/mic-protocol.md

03-architecture/ARCHITECTURE.md
  ├─> 03-architecture/technical/LABS_MASTER_ARCHITECTURE.md
  ├─> 06-specifications/
  └─> apps/ (implementations)

Citation Network¶

Documents that cite or reference each other:

• Governance → Foundation → Charter → Constitution
• Economics → Tokenomics → GI Formula → Ledger
• Architecture → Specifications → Implementations → Apps
• Research → KTT → Evaluations → Peer Review

Search & Discovery¶

By Role¶

Researchers: - Start: 05-research/ - Key: 01-whitepapers/, 05-research/foundations/, theory/

Architects: - Start: 03-architecture/ - Key: 06-specifications/, 03-architecture/adr/

Developers: - Start: 04-guides/quickstart/START_HERE.md - Key: 04-guides/development/, 04-guides/deployment/

Operators: - Start: 04-guides/operations/CUSTODIAN_GUIDE.md - Key: 08-processes/runbooks/, infra/observability/

Governance: - Start: 02-governance/overview.md - Key: FOUNDATION/, 02-governance/

By Topic¶

Integrity & GI: - ledger/gi-formula.md - tokenomics/integrity_multipliers.md - drift/DRIFT_CONTROL_CHARTER.md

Economics: - 01-whitepapers/MIC_Whitepaper_v2.1.md - tokenomics/ - mic/01_MIC_SPEC.md

Security: - security/threat-model.md - audits/ - drift/

Agents: - agents/FOUNDING_AGENTS.md - sentinels/ - companions/

Metadata Standards¶

Document Headers¶

All documents should include:

---
title: Document Title
version: X.Y.Z
status: Active|Draft|Deprecated|Archive
classification: Research|Specification|Implementation|Reference
peer_review: Complete|In Progress|Pending
last_updated: YYYY-MM-DD
authors: [Author Names]
keywords: [keyword1, keyword2, ...]
cross_references:
  - path/to/related/doc.md
  - path/to/another/doc.md
---

Versioning¶

• Major (X.0.0): Breaking changes, major revisions
• Minor (0.Y.0): New features, significant additions
• Patch (0.0.Z): Corrections, minor updates

Maintenance¶

Update Schedule¶

• Weekly: Status reports, cycle summaries
• Monthly: Implementation guides, deployment docs
• Quarterly: Architecture reviews, specification updates
• As Needed: Research documents, peer-reviewed content

Contributing¶

To add or update documentation:

1. Follow the taxonomy structure
2. Include proper metadata headers
3. Add cross-references
4. Update this index
5. Submit for review

Statistics¶

• Total Documents: 298 markdown files
• Active Documents: ~250
• Archived Documents: ~48
• Peer-Reviewed: 12
• Specifications: 45
• Research: 28
• Implementation Guides: 67
• Reports: 34

Last Index Update: 2025-01-27
Next Review: 2025-02-27
Maintained By: Mobius Systems Documentation Team

"Intelligence moves. Integrity guides." — Mobius Principle